McDonnell Genome Institute

Washington University

Transcript

lnc-PREX1-4:1

Chromosome

chr20

Gene Name

lnc-PREX1-4

Start

48403699

CPC Label

coding

End

48406626

Cancer

PRAD

Strand

-

Peptide

GQNQEEIQR

Modified Peptide

Peptide Length

9

ORF Length

197

Open Reading Frame (ORF)

MVFLNYVNIWAIAGMKLDKSKRYNSALCLCFDFSSFIWRIRKPNREKEAQPTSPVSRGQNQEEIQRGGNPPRQSRLRVHQEAHRRPTIWAGRFVSRHWPATVTLPAPQSEMPQPDSGGPMGKEQPRRRPAWFSSPGLVARTSGLPPAPQLLLLVKQAPPAQSGAFSALERCLETWRCFQTCRRQGPVLFSSPFSWTC

Conservation Score

0.764

PhyloCSF Frame 1

-1.31

No. of Spectra

1

CPC Coding Probability

0.736586

PhyloCSF Frame 2 

-3.216

CNTI Index

noncoding

Max Probability

0.9331

PhyloCSF Frame 3

0

CNTI Score

-0.360787405