McDonnell Genome Institute
Transcript
lnc-PRDM9-16:1
Chromosome
chr5
Gene Name
lnc-PRDM9-16
Start
21882921
CPC Label
noncoding
End
21884029
Cancer
BRCA-Luminal A
Strand
+
Peptide
FGGTSDVEVNEK
Modified Peptide
n[145]FGGTSDVEVNEK
Peptide Length
12
ORF Length
235
Open Reading Frame (ORF)
LLSEKKISSVQSIVPALEIANAHHKPLVIIAEDVDGEALSTLILNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAQLEKRIQEIIGQLDVTTSEYEKEKLNEWLAKLSDGVVVLKFGGTSDVEVNEKKDRVTDALNATRAAVEGGIVLGGGFALLRCIPALDSLTPANEDQKIGMEIIKRTLKIPAMTT
Conservation Score
1
PhyloCSF Frame 1
0
No. of Spectra
1
CPC Coding Probability
0.150233
PhyloCSF Frame 2
0
CNTI Index
coding
Max Probability
0.7391
PhyloCSF Frame 3
0
CNTI Score
0.765850349