The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-PPP1R3A-5:1

Chromosome

chr7

Gene Name

lnc-PPP1R3A-5

Start

114083902

CPC Label

noncoding

End

114085715

Cancer

OV

Strand

-

Peptide

VLSVTEGSK

Modified Peptide

n[145]VLSVTEGSK

Peptide Length

9

ORF Length

126

Open Reading Frame (ORF)

LRPGVERGRVSFSSLLPWFLSHLGQGVLGLPRGRAAQVTGARLGRKGPPSWDLESLRFSGRVLSVTEGSKSNRKERKEETVRACSARTSKPRRPRGGCTGPAASPGSRLLSTGCDPAGRPAWDPGR

Conservation Score

1

PhyloCSF Frame 1

-1.275

No. of Spectra

12

CPC Coding Probability

0.0300961

PhyloCSF Frame 2 

-1.766

CNTI Index

noncoding

Max Probability

0.9963

PhyloCSF Frame 3

-1.251

CNTI Score

-0.282241213