The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-PPME1-4:1

Chromosome

chr11

Gene Name

lnc-PPME1-4

Start

74497187

CPC Label

coding

End

74498084

Cancer

PRAD

Strand

+

Peptide

LEEEDIKDVFNSNNEAPVVHSLSNGEVTK

Modified Peptide

​

Peptide Length

29

ORF Length

298

Open Reading Frame (ORF)

MTTIYDLKKQKDKLLKFYAESDEQILMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYSTGWLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGKFSNDDEQDGNFEGFSMSSEKKIMSDLLTYTKNIHPETVSKLEEEDIKDVFNSNNEAPVVHSLSNGEVTKMVLNQDDHDDNDNEDDVNTAEKVPIDDMVKMCDGLIKGLEQHAFITEQEIMSVYKIKERLLRQKASLMRQMTLKETFKKAIQRNASSSLQDPLLGPSTASDASSHLKIK

Conservation Score

0.565

PhyloCSF Frame 1

0

No. of Spectra

1

CPC Coding Probability

0.999993

PhyloCSF Frame 2 

0

CNTI Index

coding

Max Probability

0.2222

PhyloCSF Frame 3

0

CNTI Score

0.718430093