The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-PPDPFL-13:1

Chromosome

chr8

Gene Name

lnc-PPDPFL-13

Start

48752954

CPC Label

coding

End

48757175

Cancer

OSCC

Strand

+

Peptide

AAPIPGGGK

Modified Peptide

n[145]AAPIPGGGK

Peptide Length

9

ORF Length

153

Open Reading Frame (ORF)

MFTWLMIPLAGRSGIWGGPRAAPIPGGGKGAGVCGDCMTMEDSGKSGRHRALFNMATEDAGERGSAGLTLGLSPGTNNQPWHEPTEAESTHSPPSERAFIYSQGVHPITQMPPPHNPNASHEASPPATPTIRLNFKMRFGRVEYPNCCPAYLF

Conservation Score

0.153

PhyloCSF Frame 1

0

No. of Spectra

11

CPC Coding Probability

0.7455

PhyloCSF Frame 2 

0

CNTI Index

noncoding

Max Probability

0.923

PhyloCSF Frame 3

0

CNTI Score

-0.356586365