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The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

GATA3-AS1:2

Chromosome

chr10

Gene Name

GATA3-AS1

Start

8050449

CPC Label

noncoding

End

8053484

Cancer

BRCA-Basal-like

Strand

-

Peptide

GAEVPGEAAPGAR

Modified Peptide

n[145]GAEVPGEAAPGAR

Peptide Length

13

ORF Length

125

Open Reading Frame (ORF)

MEPDFLHSVGVKLPHTPPNTCPRASPSHPPSQGRRDPVPVEVGKPSRVQKAEAMAQSGGAAFWGSALGLQTQGAEMLAAGPPTRARQPALPGELRGAEVPGEAAPGARALPDLGNRQSGAPGSKS

Conservation Score

1

PhyloCSF Frame 1

-2.22

No. of Spectra

9

CPC Coding Probability

0.239065

PhyloCSF Frame 2 

-0.248

CNTI Index

noncoding

Max Probability

1

PhyloCSF Frame 3

3.041

CNTI Score

-0.253494701

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