McDonnell Genome Institute

Washington University

Transcript

RTCA-AS1:6

Chromosome

chr1

Gene Name

RTCA-AS1

Start

100258018

CPC Label

coding

End

100266116

Cancer

BRCA-HER2-enriched

Strand

-

Peptide

GIPVFCIK

Modified Peptide

n[145]GIPVFCIK

Peptide Length

8

ORF Length

51

Open Reading Frame (ORF)

MPYKCQQKERWYTYIRGIPVFCIKLDFNTKSIIIDQKESLQNNKKLCSPGK

Conservation Score

0.989

PhyloCSF Frame 1

0

No. of Spectra

87

CPC Coding Probability

0.9998

PhyloCSF Frame 2 

0

CNTI Index

coding

Max Probability

0.9971

PhyloCSF Frame 3

0

CNTI Score

0.65925204